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New ugrad course, synthetic biology this fall

INTRODUCTION TO SYNTHETIC BIOLOGY
CSE 490v and 599v
Time: MWF 10.30-11.20   Room: MOR 221
Professor Georg Seelig (gseelig@u.washington.edu)

SLN: 20251, 3 credits

This class is intended for graduate and upper-level undergraduate
students from a variety of backgrounds (EE, CSE, BioE and others). The class requires math
sophistication appropriate to a junior or senior in engineering but necessary
biological and  mathematical concepts will be introduced in class.

Synthetic biology is the application of engineering principles to
biology with the dual goals of (i) building new functional biological systems (for
example for the production of biofuels or drugs) and (ii) understanding biology by
re-engineering it (“what I cannot create I do not understand”, R. Feynman).

Covered topics include:
• DNA, RNA and protein: transcription and translation
• Synthetic gene regulatory networks: oscillators, switches and others
• Theory of chemical kinetics and biochemical reaction networks
• Synthetic biology with bacteria and mammalian cells
• RNA synthetic biology: RNA switches and sensors, RNA interference
• In vitro synthetic biology: building molecular circuitry in the test tube
• Molecular programming: compilers for chemistry
•  Applications: biofuels, drug production,…

September 15, 2009

Art of Problem Solving course, and the national Putnam Math Competition

In the past few years, UW students have done incredibly well in the national Putnam Mathematics Competition. And many of these students have been CSE majors.

The big asset that we have is a “training course” (The Art of Problem Solving) taught by two young faculty members in Mathematics. This training is essential to doing well in the competition.

They would like to recruit CSE students for the coming year. Please see the announcement below, and please seriously consider this. With the help of these two great Math profs, you can do exceedingly well in this top national competition. (more…)

September 11, 2009

Business courses available in marketing, management, and accounting

CSE juniors or seniors: If you’d like to take business classes such as marketing, management and accounting as electives, the Foster School of Business BA 470, 471, and 472 course series is a great option. These are elective courses offered through UW Extension. (more…)

September 8, 2009

Need I&S credits? Like biotech stuff?

This class may be interesting to anyone curious about the future of medicine and biotechnology! Plus, five (5!) whole credits of I&S!

CHID 250A – BioFutures

NW or I&S credit
Professor: Phillip Thurtle thurtle@u.washington.edu
SLN: 11906

Students will be specifically encouraged to ask the following questions:

  • What are the ethical and legal issues involved in patenting human cell lines?
  • How are recent biotechnologies portrayed in science fiction films? What can we learn by studying these portrayals?
  • What does it mean to suggest that biotechnology is part of “an information society”?
  • How are race, class, gender, and disability mapped onto or intersect with biomedicine?
  • How do scientists manipulate space and time in the laboratory?

This class is designed to appeal to all. No prerequisites needed!

** When this was originally posted, a special character in the title prevented the complete excerpt from showing in the email notification. Apologies for the multiple emails.

August 18, 2009

Capstone Registration Now Open! Apply by 11:59PM Monday June 8th

Capstone registration is now open. You need to fill out the catalyst survey to apply, most students receive their 1st or 2nd choice. You should be through most, if not all of your 300’s in addition to having significant project experience before tackling a capstone. These courses are supposed to “cap” your experience here in CSE.   You’ll find more detailed descriptions/prereqs below.  If courses do not fill with pre-registration, open space will be released first come first served during sophomore registration each quarter.  http://www.cs.washington.edu/education/ugrad/current/Capstone.htm

2009-2010 Capstones

Autumn 2009: 454 Advanced Internet Systems -Weld
Prerequisites: 326 and significant project experience

In the past decade the Internet has gone from a rarity to an essential tool for work and play. Search engines, ecommerce platforms and computational advertising have grown in economic and social importance. This class will explain the fundamental computational principles and datamining algorithms behind these services and others, providing background for a large projects. Students will work in groups of four to build an end-to-end Web system. Each team will end with a formal oral presentation of the tool constructed.  Written reports are also manditory and should include both a description of the design choices made as well as the results of experiments designed to confirm their effectiveness.

Winter 2010: Accessibility Capstone – Ladner
Prereq: 326, 303 and project experience

As cell phones become more capable with connectivity with the internet and sensors such as cameras, compasses, GPS, and accelerometers, there are opportunities to use them as accessibility or assistive devices.  In this capstone, students will work in teams to create new applications on cell phones that allow persons with disabilities to accomplish tasks that would be difficult to impossible to do without the applications. An example would be an application for a blind person that would take a picture of a bar code on a product, decode it, look it up on the internet, then speak the name of the product.  There will be brainstorming sessions with practitioners in the assistive technology industry and with users to help students develop viable concepts for applications.  Teams will then implement and test their concepts as working applications.  Teams will prepare written reports on their applications and present their applications in a public poster session where persons with disabilities will be invited.

Spring 2010: Operating Systems Capstone – Kimura
Prereq: CSE 451

The students in the OS Capstone will work on a small team project of their own design and choosing,  but within the overarching guidelines of being operating system specific.  The students have access to the windows operating system sources for their projects.  The projects typically look at adding new features to the OS, or *fixing* the behavior of the OS.  As much as possible the projects mirror what is happening in the industry, including using the same development tools and adhering to the same standards.

Spring 2010: 477 Hardware Capstone – Patel
Prereq: Hardware track students: 466 and 467
Prereq: Software track students: 466

The plan for 477 next year is not to have it focused on just “Technology for Low-Income Regions,” but be more general than that. The students will be allowed to explore different options and so the themes can be diverse across the teams.

Projects will involve hardware design, software design, embedded devices, web applications, sensor integration, and combinations of these.  Example application themes include health care, sustainability, activity sensing, low-power and power harvesting techniques, and novel interaction techniques.

Spring 2010: Games Capstone – Popovic
Prerequisites: CSE 326; CSE 341; CSE 378 and substantial programming experience, such as in CSE 451 or 457.

This capstone course will focus on the emerging process of designing, developing and evaluating interactive games. As the game industry eclipses film and music industry in revenue, the days of developing a game by a single developer are long over. An ad-hoc approach to game design and development of the past is replaced by a well structured process, where the creativity, development prowess, artistic expression, and the skill to assess user experience all meet together to produce a compelling interactive experience.

In this course, you will learn how to iterate over the game design long before the game is developed, how to work in small teams with people who are each experts in different domains, and most importantly how to develop a game that will enable iterative refinement of the experience that will elevate your game from the realm of countless games that are abandoned in the first 30 seconds, into a realm of an addictive experience that cannot be put down.

The teams will have the choice of developing for the Flash, XNA or Iphone platforms, and choosing between several game genres including casual games, educational game, and massively-multiplayer games.

The course is open to both CSE majors and those outside of CSE. For CSE majors, please write a short description about your substantial programming experience, and describe significant exposure to at least one of the following: game development, computer graphics, human computer interaction, networking or operating systems.

June 1, 2009

Space Still Available in TC 231 this Summer

Hey everyone,

The TC/HCDE department asked us to let students know that there are spaces open in 231 this summer. If you’re still looking for classes (especially CE students), this could be a good option.

Megan

May 22, 2009

Animation Courses Info Sessions Next Week!

What:  Animation Capstone Series Information Sessions
When:  May 5th from 3-5 pm
May 6th from 3-5 pm
Where: Room 691 (Gates Commons) Paul G. Allen Center for CS&E

Refreshments will be served!

Computer Science & Engineering (CSE) and the Animation Research Labs invite you to an information session on the Animation Production undergraduate course sequence at UW Seattle. This sequence runs from Summer 2009 (A term) through Spring 2010. The Summer course, Story Design for Computer Animation, is highly recommended but optional.

The Animation Capstone culminates in a very professional and exciting collaboratively produced digital short film, similar in process to Disney/Pixar and Dreamworks productions.  Examples of previous award winning films produced in the dept will be shown and questions regarding applications and admission, etc. will be addressed. We look forward to seeing you there.

Application link: www.cs.washington.edu/research/ap
Packets of information, including the application form, are available in the CSE reception area.

Questions? Contact the instructor, Barbara Mones at mones@cs.washington.edu

May 1, 2009

New seminar for Promoting Equity in Engineering Relationships

The College of Engineering is recruiting students to help with a new NSF-funded initiative to promote equity in engineering relationships and education, and they invite you to enroll in ENGR 498C: Leadership Development to Promote Equity in Engineering Relationships (PEERs)

This 1 credit seminar will enlist engineering students’ creativity and social conscience, to create an inclusive environment in the UW College of Engineering. Students will explore topics such as diversity in science and engineering, impact of unconscious bias, and community engagement.

Join the College of Engineering PEERs initiative. Students who successfully complete the project seminar are eligible for internship opportunities as PEERs Leaders.

Thursdays 1:30-2:20
Priority Given to Engineering Students
For an add code, please contact Professor Sapna Cheryan at scheryan@u.washington.edu

April 30, 2009

Reminder: sign up for 590k, Research in CS seminar by today!

Just a reminder to sign up for CSE 590k: Research in CS by today if you’re interested. (Undergrads, please email before registering.) We know it came a little late so you might already have a full schedule and don’t need the credits but it would help us to know how many people are coming. If you absolutely don’t want to register but do want to attend, just drop us a line!

SLN: 12192
Time: Th, 2:30-3:20
Location: CSE 503
Credit: 1 Unit Credit / No-credit
Instructor: Your fellow grad students
E-mail: eadar@cs.washington.edu or kayur@cs.washington.edu

Thanks! Eytan (more…)

April 6, 2009

Combinatorics talks open to CSE majors (1 credit!)

The math department is offering weekly talks on oombinatorics, and invited CSE majors to attend. Option to register for one credit!

Combinatorics is one of the most active and growing areas of research in mathematics today. It has application in fields as diverse as computing science, optimization, biology, physics, probability, algebra, and geometry. This spring quarter we are again offering a pre-seminar in combinatorics for undergraduates. (Non-undergrads are also welcome to attend.)  (more…)

March 31, 2009

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